Publications

2024

1.  Hanzawa, A, Rahman AA, Rahman A* (2024) Actin isovariant ACT2-mediated cellular auxin homeostasis regulates lateral root organogenesis in Arabidopsis thaliana  Cytoskeleton DOI: https://doi.org/10.1002/cm.21956 *Corresponding author

2. Wu J, Li P, Zhu D, Ma H, Li M, Lai Y, Peng Y, Li H, Li S, Wei J, Bian X, Rahman A, Wu S (2024) SlCRCa is a key D-class gene controlling ovule fate determination in tomato Plant Biotechnology Journal DOI: https://doi.org/10.1111/pbi.14317

3. Tamanna N, Mojumder A, Azim T, Iqbal MI, Alam MNU, Rahman A, Seraj, ZI (2024) Comparative metabolite profiling of salt sensitive Oryza sativa and the halophytic wild rice Oryza coarctata under salt stress. Plant-Environment Interactions DOI: https://doi.org/10.1002/pei3.10155

4. Wu J^†, Li P ^†, Li M ^†, Zhu D , H Ma , Xu H, Li S , Wei J , Bian X, Wang M , Lai Y, Peng U, Li H, Rahman A, Wu S*(2024) Heat stress impairs floral meristem termination and fruit development via affecting BR-SlCRCa cascade in tomato Plant Communications DOI: https://doi.org/10.1016/j.xplc.2023.100790

(Selected as Cover article for April 8, 2024 issue)

2023

1. Wu J, Sun W, Sun C, Xu C, Li S, Li P, Xu H, Zhu D, Li M, Yang L, Wei J, Hanzawa A, Tapati SJ, Ueonoyama R, Miyazaki M, Rahman A*, Wu S* (2023) Cold stress induces malformed tomato fruits by breaking the feedback loops of stem cell regulation in floral meristem New Phytologist 237, 2268-2283 DOI: 10.1111/nph.18699 *Co-corresponding author

2022

1. Numata T, Sugita K, Rahman AA, Rahman A* (2022) Actin isovariant ACT7 controls root meristem development in Arabidopsis through modulating auxin and ethylene responses J. Exp.Bot 73, 6255-6271. DOI: https://doi.org/10.1093/jxb/erac280 *Corresponding author

2. Rahman J, Sultana F, Fatima K, Hasan MM, Gani N, Hossain MS, Chowdhury AK, Rahman A (2022) Genetic diversity of field mustard (Brassica Rapa L.) and their staurated and unsaturated fatty acids association

SABRAO Journal of Breeding and Genetics 54, 249-266. DOI: http://doi.org/10.54910/sabrao2022.54.2.4

3. Ashraf MA, Rahman A* (2022) Cellular protein trafficking: a new player in low temperature response pathway

Plants 11, 933. DOI: https://doi.org/10.3390/plants11070933 *Corresponding author

(Invited review for the special issue ` Plants response to temperature extremes`)

4. ラーマン・アビドゥール*, 伊藤 圭汰 (2022)

Cs を効率的に取り込む植物タンパク質を世界で初めて同定－放射性セシウムで汚染された土壌を植物で浄化する手法の開発に前進. Isotope News 779: pp. 42-45.

5. ラーマン・アビドゥール*, 伊藤 圭汰 (2022)

放射性セシウムを効率的に除去できるファイトレメディエーション. クリーンテクノロジ 32(11): pp. 59-61.

2021

1. Ashraf MA, Akihiro T, Ito K, Kumagai S, Sugita R, Tanoi K, Rahman A* (2021) ATP Binding Cassette Proteins ABCG37 and ABCG33 function as potassium-independent cesium uptake carriers in Arabidopsis roots

Molecular Plant 14:664-678 DOI: https://doi.org/10.1016/j.molp.2021.02.002 *Corresponding author

(This article got wide media coverage in Japan including Newspaper and TV channels. This was also selected as the spotlight article)

2. Rahman T, Shao M, Pahari S, Venglat P, Soolanayakanahally R, Qiu X, Rahman A, Tanino K (2021) Dissecting the roles of cuticular wax in plant resistance to shoot dehydration and low-temperature stress in Arabidopsis

Int. J. Mol. Sci. 22(4), 1554; DOI: https://doi.org/10.3390/ijms22041554

3. Sumaya P, Rahman A* (2021) Actin isovariant ACT7 modulates root thermomorphogenesis by altering intracellular auxin homeostasis.

Int. J. Mol. Sci. 22 (14) 7749; DOI: https://doi.org/10.3390/ijms22147749

2020

1. Aslam M, Sugita K, Qin Y, Rahman A* (2020) Aux/IAA14 Regulates microRNA-Mediated Cold Stress Response in Arabidopsis Roots.

Int. J. Mol. Sci. 21(22), 8441; DOI: https://doi.org/10.3390/ijms21228441 *Corresponding author

2. Rahman A, Kawamura Y, Maeashima M, Rahman A, Uemura M (2020) – Plasma membrane aquaporin members PIPs act in concert to regulate cold acclimation and freezing tolerance responses in Arabidopsis thaliana

Plant and Cell Physiology 61 (4): 787-802 DOI:10.1093/pcp/pcaa005

2019

1. Ashraf MA, Rahman A* (2019) Cold stress response in Arabidopsis thaliana is mediated by GNOM ARF-GEF

Plant Journal 97: 500-516 DOI: 10.1111/tpj.14137 *Corresponding author

2. Ashraf MA, Umetsu K, Ponomarenko O, Saito M, Aslam M, Antipova O, Dolgova N, Kiani CD, Susan Nezhati S, Tanoi K, Minegishi K, Nagatsu K, Kamiya T, Fujiwara T, Luschnig C, Tanino K, Pickering I, George GN,

Rahman A* (2019) PIN Formed 2 modulates the transport of arsenite in Arabidopsis thaliana.

Plant Communications Vol 1; 100009 DOI: 10.1016/j.xplc.2019.100009 *Corresponding author

2018

1. Li P, Yu Q, Xu G, Xu C, Qi S, Wang H, Zhong F, Baskin TI, Rahman A, Wu S (2018) Construction of a functional casparian strip in non-endodermal lineages is orchestrated by two parallel signaling systems in Arabidopsis thaliana

Current Biology 28: 2777-2786 DOI: 10.1016/j.cub.2018.07.028

2. Li P, Yang M, Chang J, Wu J, Zhong F, Rahman A, Qin H, Wu S (2018) Spatial expression and functional analysis of Casparian strip regulatory genes in endodermis reveals the conserved mechanism in tomato

Frontiers in Plant Science Vol 9; Article 832 DOI: 10.3389/fpls.2018.00832

3. Ashraf MA, Rahman A * (2018) - Hormonal regulation of cold stress response In “Cold Tolerance in Plants: Physiological, Molecular and Genetic Perspectives” Springer-Nature (eds: Wani, SH and Venura H) pp-65-88

*Corresponding author

2017

1. Takhashi M, Umetsu K, Higaki T, Oono, Y, Blanclaflor EB, Rahman A* (2017) SMALL ACIDIC PROTEIN 1 (SMAP1) and SCF^TIR1-regulated ubiquitin proteasome pathway act in concert to induce 2,4-dichlorophenoxyacetic

 acid-mediated alteration of actin in Arabidopsis roots

Plant Journal 89: 940-956 DOI: 10.1111/tpj.13433 *Corresponding author

2. Aslam M and Rahman A* (2017) CRISPR-Cas9 Genome editing technology. In Workshop handbook for Ist national conference on CRISPR-Cas9 Genome editing technology: 8-25.

*Corresponding author

3. Ashraf MA and Rahman A* (2017) CRISPR/Cas9 and Biosafety Issues. In Workshop handbook for Ist national conference on CRISPR-Cas9 Genome editing technology: 29-34.

*Corresponding author

2013

1. Hanzawa T, Shibasaki K, Numata T, Kawamura K, Gaude T, Rahman A* (2013) Cellular auxin homeostasis under high temperature is regulated through a SORTING NEXIN 1 dependent endosomal trafficking pathway

Plant Cell 25: 3424-3433 DOI: https://doi.org/10.1105/tpc.113.115881*Corresponding author

2. Rahman A* (2013) Auxin: a regulator of cold stress response.

Physiologia Plantarum 147: 28-35; doi:10.1111/j.1399-3054.2012.01617.x

*Corresponding author, *** Invited review for abiotic stress issue.

3. Shibasaki, K, Rahman A* (2013) Auxin and temperature stress: Molecular and cellular Perspectives. In Polar Auxin Transport, Signaling and Communication in Plants 17 (eds: Chen, R and Baluska, F) pp 295-310. Springer.

*Corresponding author

2012

1. Nakasone A, Fujiwara M, Fukao Y, Biswas KK, Rahman A, Kawai-Yamada M, Narumi I, Uchimiya H, and Oono Y (2012) SMALL ACIDIC PROTEIN 1 acts with RUB modification components, the COP9 signalosome and

AXR1, to regulate growth and development of Arabidopsis thaliana

Plant Physiol. 160:93-105 DOI: https://doi.org/10.1104/pp.111.188409

2. Muday GK*, Rahman A*, Binder BM (2012) Auxin and ethylene: collaborators or competitors?

Trends in Plant Science 17:181-19; DOI:10.1016/j.tplants.2012.02.001

These authors contributed equally. *** Feature review and cover article

2010

1. Rahman A* , Takahashi M, Shibasaki K, Wu S, Inaba T, Tsurumi S, Baskin TI (2010) Gravitropism of Arabidopsis thaliana roots requires the polarization of PIN2 toward the root tip in meristematic cortical cells

Plant Cell 22: 1762-1776 DOI: https://doi.org/10.1105/tpc.110.075317

*Corresponding author

2. Baskin TI, Peret B, Baluška F, Benfey PN, Bennett M, Forde BG, Gilroy S, Helariutta Y, Hepler PK, Leyser O, Masson PH, Muday GK, Murphy AS, Poethig S, Rahman A, Roberts K, Scheres B, Sharp RE, and Somerville C. (2010) Shootward and rootward: peak terminology for plant polarity

Trends in Plant Science 15: 593-594 DOI: https://doi.org/10.1016/j.tplants.2010.08.006 * (Letter)

2009

1. Shibasaki K, Uemura M, Tsurumi S, Rahman A* (2009) Auxin response in Arabidopsis under cold stress: underlying molecular mechanisms

Plant Cell 21:3823-3838 DOI: https://doi.org/10.1105/tpc.109.069906

*Corresponding author

2.Sukumar P. Edwards KS, Rahman A, DeLong A, Muday GK (2009) PINOID kinase regulates root gravitropism through modulation of PIN2-dependent basipetal auxin transport in Arabidopsis

Plant Physiol 150: 722-735 DOI: https://doi.org/10.1104/pp.108.131607

2008

1. Xu S, Rahman A, Baskin T, Kieber J (2008) Two leucine-rich repeat receptor kinases mediate signaling, linking cell wall biosythesis and ACC synthase in Arabidopsis

Plant Cell 20:3065-3069 DOI: https://doi.org/10.1105/tpc.108.063354

*** This article was selected as one of the featured articles for November issue of Plant Cell.

2. Okamoto T, Tsurumi S, Shibasaki K, Obana Y, Takaji H, Oono Y, Rahman A* (2008) Genetic Dissection of Hormonal Responses in the Roots of Arabidopsis Grown under Continuous Mechanical Impedance

Plant Physiol 146:1651-1662 DOI: https://doi.org/10.1104/pp.107.115519

*corresponding author, *** This article was selected as one of the featured articles for April issue of Plant Physiol.

3. Muday G K, Rahman A (2008) Auxin transport and the integration of gravitropic growth. In Plant Tropism, (Gilroy S and Masson P, ed.). pp 47-68. Blackwell Publishing, MA, U.S.A.

2007

1. Biswas KK, Ooura C, Higuchi K, Miyazaki Y, Nguyen VV, Rahman A, Uchimiya H, Kiyosue T, Koshiba T, Tanaka A, Narumi I, and Oono Y (2007) Genetic Characterization of Mutants Resistant to the Antiauxin p-chlorophenoxyisobutyric Acid Reveals that AAR3, a Gene Encoding a DCN1-Like Protein, regulates responses to the synthetic auxin 2,4-dichlorophenoxyacetic acid in Arabidopsis roots

Plant Physiol 145:773-785 DOI: https://doi.org/10.1104/pp.107.104844

2. Oikawa A, Rahman A, Yamashita T, Taira H, Kidou S (2007) Virus-induced gene silencing of P23k in barley leaf reveals morphological changes involved in secondary wall formation

J. Exp. Bot. 58: 2617-2625 DOI: https://doi.org/10.1093/jxb/erm109

3. Rahman A, Bannigan A, Sulaman W, Pechter P, Blancaflor EB, Baskin TI (2007) Auxin, actin, and growth of the Arabidopsis thaliana primary root

Plant Journal 50:514-528 DOI: https://doi.org/10.1111/j.1365-313X.2007.03068.x

***This article was evaluated as a must read article by the Faculty of 1000 Biology.

2006

1. Rahman A, Nakasone A, Chhun T, Ooura C, Biswas KK, Uchimiya H, Tsurumi S, Baskin TI, Tanaka A, Oono Y (2006) A small acidic protein, SMAP1, mediates responses of the Arabidopsis root to the synthetic auxin 2,4-dichlorophenoxyacetic acid

Plant Journal 47:788-801 DOI: https://doi.org/10.1111/j.1365-313X.2006.02832.x

***This paper was selected as featured article by the editor-in -chief of The Plant Journal and also was evaluated as a must read article by the Faculty of 1000 Biology.

2004

1. Swarup R, Kargul J, Marchant A, Zadik D, Rahman A, Mills R, Yemm A, May S, Williams L, Millner P, Tsurumi S, Moore I, Napier R, Kerr ID, Bennett MJ (2004) Structure-Function Analysis of the presumptive Arabidopsis Auxin Permease AUX1

Plant Cell 16:3069-3083 DOI: doi: 10.1105/tpc.104.024737

2003

1. Oono Y, Ooura C, Rahman A, Aspuria ET, Hayashi KI, Tanaka A, Uchimiya H (2003) p-Chlorophenoxyisobutyricacid impairs auxin response in Arabidopsis root

Plant Physiol 133: 1135-1147 DOI: 10.1104/pp.103.027847

2. Ahamed A, Rahman A, Hayashi F, Ueji S, Amakawa T, Tsurumi S (2003) Isolation of chromosaponin I-specific antibody by affinity chromatography

Biochemical and Biophysical Research Communication (BBRC) 302: 587-592 DOI: 10.1016/s0006-291x(03)00217-1

2002

1. Rahman A, Hosokawa S, Oono Y, Amakawa T, Goto N, Tsurumi S (2002) Auxin-and ethylene-response during Arabidopsis root hair development dissected by auxin influx modulators

Plant Physiol 130: 1908-1917 DOI: https://doi.org/10.1104/pp.010546

2. Rahman A, Tsurumi S (2002) The unique auxin influx modulator chromosaponin I: a physiological overview

Plant Tissue Culture (PTC) 12: 181-194 

*** invited review article

2001

1. Rahman A, Amakawa T, Goto N, Tsurumi S (2001) Auxin is a positive regulator for ethylene mediated response in the growth of Arabidopsis roots

Plant Cell Physiol 42:301-307 DOI: 10.1093/pcp/pce035.

2. Rahman A, Ahamed A, Amakawa T, Goto N, Tsurumi S (2001) Chromosaponin I specifically interacts with AUX1 protein in regulating the gravitropic response of Arabidopsis roots

Plant Physiol 125:990-1000 DOI: 10.1104/pp.125.2.990.

3. Rahman A, Hosokawa S, Amakawa T, Goto N, Tsurumi S (2001) Effects of CSI and 1-NOA on root hair developmental process of Arabidopsis

In proceedings of the 6^th symposium of the international society of root research: 224-225

2000

1. Rahman A, Tsurumi S, Amakawa T, Soga K, Hoson T, Goto N, Kamisaka S (2000) Involvement of ethylene and gibberellin  signalings in Chromosaponin I-induced cell division and cell elongation in the roots of Arabidopsis seedlings

Plant Cell Physiol. 41: 1-9 DOI: 10.1093/pcp/41.1.1.

2. Tsurumi S, Ishizawa K, Rahman A, Soga K, Hoson T, Goto N, Kamisaka S (2000) Effects of Chromosaponin I and Brassinolide on the growth of roots in etiolated Arabidopsis seedlings

J. of Plant Physiol. 156: 60-67